Python 3 parsers for the following resources:
TODO (add parsers for): | ChEMBL | STITCH
Example usage:
from drugbox import drugbank
file_name = "drugbank.xml"
out_file = "targets.tsv"
# Output uniprot ids of (pharmacological) targets of drugs
drugbank.output_data(file_name, out_file, target_type_list = ["target"])
# Output gene symbols of all targets (enzymes, transporters, carriers, etc) of drugs along with the known action information
drugbank.output_target_info(file_name, out_file)See toolbox repository for a related package with other parsers (DrugBank, ChEMBL and STITCH) for Python 2 and extra functionality.